Plant Genetics

Publications by Dr. Udall


1) Flagel L, Udall JA, Nettleton D, Wendel JF (2008a) Duplicate gene expression in allopolyploid Gossypium reveals two phases of expression evolution. BMC Evolutionary Biology Accepted

2) Flagel LE, Udall JA, Nettleton D, Wendel JF (2008b) Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct modes of expression evolution. BMC Evolutionary Biology Submitted

3) Hovav R, Udall J, Hovav E, Rapp R, Flagel L, Wendel J (2008a) A majority of cotton genes are expressed in single-celled fiber. Planta 227:319-329

4) Hovav R, Udall JA, Chaudhary B, Hovav E, Flagel L, Hu G, Wendel JF (2008b) The evolution of spinnalbe cotton fiber entailed prolonged development and a novel metabolism. PLOS Genetics 4

5) Hovav R, Udall JA, Chaudhary B, Rapp R, Flagel L, Wendel JF (2008c) Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. PNAS Accepted

6) Hovav R, Udall JA, Hovav E, Rapp R, Flagel LE, Wendel JF (2007) A majority of cotton genes are expressed in single-cell fiber. Planta

7) Udall JA, Flagel LE, Cheung F, Woodward A, Hovav R, Rapp RA, Swanson JM, Lee J, Gingle A, Nettleton D, Town CD, Chen ZJ, Wendel JF (2007) Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics 8:81

8) Amarasinghe BHRR, Faivre-Nitschke E, Wu Y, Udall JA, Dennis ES, Constable G, Llewellyn DJ (2006) Genomic approaches to the discovery of promoters for sustained expression in cotton (Gossypium hirsutum L.) under field conditions: expression analysis in transgenic cotton and Arabidopsis of a Rubisco small subunit promoter identified using EST sequence analysis and cDNA microarrays. Plant Biotechnology 23:437-450

9) Quijada PA, Udall JA, Lambert B, Osborn TC (2006) Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 1. Identification of genomic regions from winter germplasm 113:549-561

10) Udall JA, Quijada PA, Lambert B, Osborn TC (2006a) Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 2. Identification of alleles from unadapted germplasm. Theoretical and Applied Genetics 113:597-609

11) Udall JA, Swanson JM, Haller K, Rapp RA, Sparks ME, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat AB, Sickler BA, Wilkins TA, Guo JY, Chen XY, Scheffler J, Taliercio E, Turley R, McFadden H, Payton P, Klueva N, Allen R, Zhang D, Haigler C, Wilkerson C, Suo J, Schulze SR, Pierce ML, Essenberg M, Kim H, Llewellyn DJ, Dennis ES, Kudrna D, Wing R, Paterson AH, Soderlund C, Wendel JF (2006b) A global assembly of cotton ESTs. Genome Research 16:441-450

12) Udall JA, Swanson JM, Nettleton D, Percifield RJ, Wendel JF (2006c) A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics 173:1823-1827

13) Udall JA, Wendel JF (2006) Polyploidy and crop improvement. The Plant Genome, a supplement to Crop Science 1:S1-S14

14) Zhao J, Udall JA, Quijada PA, Grau C, Meng J, Osborn TC (2006) Quantitative trait loci for resistance to Sclerotinia sclerotiorum and its association with a homeologous non-reciprocal transposition in Brassica napus L. Theoretical and Applied Genetics 112:509-516

15) Udall JA, Quijada PA, Osborn TC (2005) Detection of Chromosomal Rearrangements Derived From Homeologous Recombination in Four Mapping Populations of Brassica napus L. Genetics 169:967-979

16) Wu Y, Rozenfeld S, Defferrard A, Ruggiero K, Udall J, Kim H, Llewellyn D, Dennis E (2005) Cycloheximide treatment of cotton ovules alters the abundance of specific classes of mRNAs and generates novel ESTs for microarray expression profiling. Molecular Genetics and Genomics 274:477-493

17) Lukens LN, Quijada PA, Udall J, Pires JC, Schranz ME, Osborn TC (2004) Genome redundancy and plasticity within ancient and recent Brassica crop species. Biological Journal of the Linnean Society 82:665-674

18) Quijada PA, Udall JA, Polewicz H, Vogelzang RD, Osborn TC (2004) Phenotypic Effects of Introgressing French Winter Germplasm into Hybrid Spring Canola. Crop Sci 44:1982-1989

19) Thro AM, Parrott W, Udall JA, Beavis WD (2004) Genomics and plant breeding: The experience of the initiative for future agricultural and food systems. Crop Science 44:1893

20) Udall JA, Quijada PA, Polewicz H, Vogelzang R, Osborn TC (2004) Phenotypic Effects of Introgressing Chinese Winter and Resynthesized Brassica napus L. Germplasm into Hybrid Spring Canola. Crop Sci 44:1990-1996

21) Udall JA, Souza E, Anderson J, Sorrells ME, Zemetra RS (1999) Quantitative trait loci for flour viscosity in winter wheat. Crop Science 39:238-242